The best I can come up with is to re-create the tables again. I did this graphically in MySQL Workbench, exported the SQL create. HOWEVER: it wouldn’t execute. I had to remove DEFAULT NULL  from project_id statement as this was illegal.
This code now executes.
I would still like to know WHY I couldn’t ALTER TABLES?!?!
SET @OLD_UNIQUE_CHECKS=@@UNIQUE_CHECKS, UNIQUE_CHECKS=0;
SET @OLD_FOREIGN_KEY_CHECKS=@@FOREIGN_KEY_CHECKS, FOREIGN_KEY_CHECKS=0;
SET @OLD_SQL_MODE=@@SQL_MODE, SQL_MODE='TRADITIONAL';
DROP SCHEMA IF EXISTS `trackstar_dev` ;
CREATE SCHEMA IF NOT EXISTS `trackstar_dev` DEFAULT CHARACTER SET latin1 ;
USE `trackstar_dev` ;
-- -----------------------------------------------------
-- Table `trackstar_dev`.`tbl_project`
-- -----------------------------------------------------
DROP TABLE IF EXISTS `trackstar_dev`.`tbl_project` ;
CREATE  TABLE IF NOT EXISTS `trackstar_dev`.`tbl_project` (
  `id` INT(11) NOT NULL AUTO_INCREMENT ,
  `name` VARCHAR(128) NULL DEFAULT NULL ,
  `description` TEXT NULL DEFAULT NULL ,
  `create_time` DATETIME NULL DEFAULT NULL ,
  `create_user_id` INT(11) NULL DEFAULT NULL ,
  `update_time` DATETIME NULL DEFAULT NULL ,
  `update_user_id` INT(11) NULL DEFAULT NULL ,
  PRIMARY KEY (`id`) )
ENGINE = MyISAM
AUTO_INCREMENT = 8
DEFAULT CHARACTER SET = latin1;
-- -----------------------------------------------------
-- Table `trackstar_dev`.`tbl_user`
-- -----------------------------------------------------
DROP TABLE IF EXISTS `trackstar_dev`.`tbl_user` ;
CREATE  TABLE IF NOT EXISTS `trackstar_dev`.`tbl_user` (
  `id` INT(11) NOT NULL AUTO_INCREMENT ,
  `email` VARCHAR(256) NOT NULL ,
  `username` VARCHAR(256) NULL DEFAULT NULL ,
  `password` VARCHAR(256) NULL DEFAULT NULL ,
  `last_login_time` DATETIME NULL DEFAULT NULL ,
  `create_time` DATETIME NULL DEFAULT NULL ,
  `create_user_id` INT(11) NULL DEFAULT NULL ,
  `update_time` DATETIME NULL DEFAULT NULL ,
  `update_user_id` INT(11) NULL DEFAULT NULL ,
  PRIMARY KEY (`id`) )
ENGINE = InnoDB
DEFAULT CHARACTER SET = latin1;
-- -----------------------------------------------------
-- Table `trackstar_dev`.`tbl_issue` 
-- Note: DEFAULT NULL removed from `project_id` statement as this was illegal.
-- -----------------------------------------------------
DROP TABLE IF EXISTS `trackstar_dev`.`tbl_issue` ;
CREATE  TABLE IF NOT EXISTS `trackstar_dev`.`tbl_issue` (
  `id` INT(11) NOT NULL AUTO_INCREMENT ,
  `name` VARCHAR(256) NOT NULL ,
  `description` VARCHAR(2000) NULL DEFAULT NULL ,
  `project_id` INT(11) NOT NULL  ,
  `type_id` INT(11) NULL DEFAULT NULL ,
  `status_id` INT(11) NULL DEFAULT NULL ,
  `owner_id` INT(11) NULL DEFAULT NULL ,
  `requester_id` INT(11) NULL DEFAULT NULL ,
  `create_time` DATETIME NULL DEFAULT NULL ,
  `create_user_id` INT(11) NULL DEFAULT NULL ,
  `update_time` DATETIME NULL DEFAULT NULL ,
  `update_user_id` INT(11) NULL DEFAULT NULL ,
  PRIMARY KEY (`id`, `project_id`) ,
  INDEX `fk_issue_project` (`project_id` ASC) ,
  INDEX `fk_issue_owner` (`owner_id` ASC) ,
  INDEX `fk_issue_requester` (`requester_id` ASC) ,
  CONSTRAINT `fk_issue_project`
    FOREIGN KEY (`project_id` )
    REFERENCES `trackstar_dev`.`tbl_project` (`id` )
    ON DELETE CASCADE
    ON UPDATE RESTRICT,
  CONSTRAINT `fk_issue_owner`
    FOREIGN KEY (`owner_id` )
    REFERENCES `trackstar_dev`.`tbl_user` (`id` )
    ON DELETE CASCADE
    ON UPDATE RESTRICT,
  CONSTRAINT `fk_issue_requester`
    FOREIGN KEY (`requester_id` )
    REFERENCES `trackstar_dev`.`tbl_user` (`id` )
    ON DELETE CASCADE
    ON UPDATE RESTRICT)
ENGINE = InnoDB
DEFAULT CHARACTER SET = latin1;
-- -----------------------------------------------------
-- Table `trackstar_dev`.`tbl_project_user_assignment`
-- -----------------------------------------------------
DROP TABLE IF EXISTS `trackstar_dev`.`tbl_project_user_assignment` ;
CREATE  TABLE IF NOT EXISTS `trackstar_dev`.`tbl_project_user_assignment` (
  `project_id` INT(11) NOT NULL ,
  `user_id` INT(11) NOT NULL ,
  `create_time` DATETIME NULL DEFAULT NULL ,
  `create_user_id` INT(11) NULL DEFAULT NULL ,
  `update_time` DATETIME NULL DEFAULT NULL ,
  `update_user_id` INT(11) NULL DEFAULT NULL ,
  PRIMARY KEY (`project_id`, `user_id`) ,
  INDEX `user_id` (`user_id` ASC) ,
  INDEX `fk_project_user` (`project_id` ASC) ,
  CONSTRAINT `fk_project_user`
    FOREIGN KEY (`project_id` )
    REFERENCES `trackstar_dev`.`tbl_project` (`id` )
    ON DELETE CASCADE
    ON UPDATE RESTRICT,
  CONSTRAINT `fk_user_project`
    FOREIGN KEY (`user_id` )
    REFERENCES `trackstar_dev`.`tbl_user` (`id` )
    ON DELETE CASCADE
    ON UPDATE RESTRICT)
ENGINE = InnoDB
DEFAULT CHARACTER SET = latin1;
SET SQL_MODE=@OLD_SQL_MODE;
SET FOREIGN_KEY_CHECKS=@OLD_FOREIGN_KEY_CHECKS;
SET UNIQUE_CHECKS=@OLD_UNIQUE_CHECKS;